add_blast_info: Add information from 'blast_pq()' to the 'tax_table' slot of...
In adrientaudiere/MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis
add_blast_info R Documentation
Add information from blast_pq() to the tax_table slot of a phyloseq object
Description
Basically a wrapper of blast_pq() with option unique_per_seq = TRUE and
score_filter = FALSE.
Add the information to the taxtable
Usage
add_blast_info(physeq, fasta_for_db, silent = FALSE, ...)
Arguments
physeq
(required): a phyloseq-class object obtained
using the phyloseq package.
fasta_for_db
path to a fasta file to make the blast database
silent
(logical) If true, no message are printing.
...
Other arguments passed on to blast_pq() function.
Value
A new phyloseq-class object with more information in tax_table based on a
blast on a given database
Author(s)
Adrien Taudière
adrientaudiere/MiscMetabar documentation built on Oct. 13, 2024, 9:42 p.m.
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| add_blast_info | R Documentation |
Add information from blast_pq() to the tax_table slot of a phyloseq object
Description
Basically a wrapper of blast_pq() with option unique_per_seq = TRUE and
score_filter = FALSE.
Add the information to the taxtable
Usage
add_blast_info(physeq, fasta_for_db, silent = FALSE, ...)
Arguments
physeq |
(required): a |
fasta_for_db |
path to a fasta file to make the blast database |
silent |
(logical) If true, no message are printing. |
... |
Other arguments passed on to |
Value
A new phyloseq-class object with more information in tax_table based on a
blast on a given database
Author(s)
Adrien Taudière
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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