format2dada2: Format a fasta database in dada2 format

In adrientaudiere/MiscMetabar: Miscellaneous Functions for Metabarcoding Analysis

Format a fasta database in dada2 format

Description

First format in sintax format and then in dada2 format

Usage

format2dada2(
  fasta_db = NULL,
  taxnames = NULL,
  output_path = NULL,
  from_sintax = TRUE,
  ...
)

Arguments

fasta_db	A link to a fasta files
taxnames	A list of names to format. You must specify either fasta_db OR taxnames, not both.
output_path	(optional) A path to an output fasta files. Only used if fasta_db is set.
from_sintax	(logical, default FALSE) Is the original fasta file in sintax format?
...	Additional arguments passed on to format2sintax() function

Value

Either an object of class DNAStringSet or a vector of reformated names

Author(s)

Adrien Taudière

See Also

format2dada2_species(), format2sintax()

adrientaudiere/MiscMetabar documentation built on Feb. 22, 2025, 10:47 a.m.