API for aertslab/AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
| Global functions | |
|---|---|
| .AUC.geneSet_norm | Source code |
| .AUC.geneSet_old | Source code |
| .AUCell_buildRankings | Source code |
| .AUCell_calcAUC | Source code |
| .AUCell_run | Source code |
| .AUCell_run_internal | Source code |
| .auc | Source code |
| .auc_assignmnetThreshold_v6 | Source code |
| .auc_plotBinaryTsne | Source code |
| .auc_plotGradientTsne | Source code |
| .auc_plotHist | Source code |
| .cellProps_plotTsne | Source code |
| AUCell_assignCells | Man page Source code |
| AUCell_buildRankings | Man page |
| AUCell_buildRankings,ExpressionSet-method | Man page |
| AUCell_buildRankings,SummarizedExperiment-method | Man page |
| AUCell_buildRankings,dgCMatrix-method | Man page |
| AUCell_buildRankings,matrix-method | Man page |
| AUCell_calcAUC | Man page |
| AUCell_calcAUC,GeneSet-method | Man page |
| AUCell_calcAUC,GeneSetCollection-method | Man page |
| AUCell_calcAUC,character-method | Man page |
| AUCell_calcAUC,list-method | Man page |
| AUCell_exploreThresholds | Man page Source code |
| AUCell_plotHist | Man page Source code |
| AUCell_plotTSNE | Man page Source code |
| AUCell_run | Man page |
| AUCell_run,SummarizedExperiment-method | Man page |
| AUCell_run,dgCMatrix-method | Man page |
| AUCell_run,matrix-method | Man page |
| asHTML | Source code |
| aucellResults | Man page |
| aucellResults-class | Man page |
| binarizeAUC | Source code |
| cbind | Man page |
| cbind,aucellResults-method | Man page |
| getAUC | Man page |
| getAUC,aucellResults-method | Man page |
| getAssignments | Man page Source code |
| getRanking | Man page |
| getRanking,aucellResults-method | Man page |
| getSetNames | Man page Source code |
| getThresholdSelected | Man page Source code |
| nGenes | Man page |
| nGenes,GeneSet-method | Man page |
| nGenes,GeneSetCollection-method | Man page |
| orderAUC | Man page Source code |
| plotEmb_rgb | Man page Source code |
| plotGeneCount | Man page Source code |
| plotTsne_cellProps | Man page Source code |
| rbind | Man page |
| rbind,aucellResults-method | Man page |
| setGeneSetNames | Man page |
| setGeneSetNames,GeneSetCollection-method | Man page |
| show | Man page |
| show,aucellResults-method | Man page |
| subsetGeneSets | Man page |
| subsetGeneSets,GeneSetCollection-method | Man page |
| updateAucellResults | Man page Source code |
