getSetNames: Get gene set name (excluding number of genes/regions after...

In aertslab/AUCell: AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Get gene set name (excluding number of genes/regions after space)

Description

Returns the gene set name (i.e. selects the given pattern)

Usage

getSetNames(aucMat, patterns, startChr = "^", endChr = " |_")

Arguments

aucMat	AUC matrix
patterns	patterns
startChr	Character to indicate the start (typically "^")
endChr	Character at the end of the gene set name, i.e. space or "_" after a transcription factor name

Value

Returns the gene set name (i.e. selects the given pattern)

aertslab/AUCell documentation built on March 12, 2024, 11:40 p.m.