Man pages for aertslab/AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)
| AUCell_assignCells | AUCell_assignCells |
| AUCell_buildRankings | Build gene expression rankings for each cell |
| AUCell_calcAUC | Calculate AUC |
| AUCell_exploreThresholds | AUCell_exploreThresholds |
| AUCell_plotHist | Plot AUC histogram |
| AUCell_plotTSNE | Plot |
| aucellResults-class | Wrapper to the matrix that stores the AUC or the cell... |
| AUCell_run | Run AUCell |
| GeneSet-methods | GeneSet methods |
| getSetNames | Get gene set name (excluding number of genes/regions after... |
| orderAUC | orderAUC |
| plotEmb_rgb | plotEmb_rgb |
| plotGeneCount | plotGeneCount |
| plotTsne_cellProps | plotTsne_cellProps |
| updateAucellResults | Update AUCell results |
