Man pages for aet21/EpiSCORE
Epigenetic cell-type deconvolution with Single-Cell Omic References
| BladderRef | Bladder mRNA expression and DNAm reference matrix |
| BrainRef | Brain mRNA expression and DNAm reference matrix |
| BreastRef | Breast mRNA expression and DNAm reference matrix |
| ColonRef | EpiSCORE References for Colon |
| constAvBetaTSS | Construct a DNAm matrix at gene-promoter level |
| ConstExpRef | Construct mRNA expression reference matrix |
| ConstMergedDNAmRef | Construct merged DNAm reference matrix |
| dataExampleLung | Data Object Files for Running Vignette |
| dbRMAP | Database of matched DNAm and gene expression from RMAP |
| dbSCM2 | Database of matched DNAm and gene expression from SCM2 |
| EsoRef | Esophageal mRNA expression and DNAm reference matrix |
| HeartRef | Heart mRNA expression and DNAm reference matrix |
| ImputeDNAmRef | Impute a DNAm reference matrix |
| KidneyRef | EpiSCORE References for Kidney |
| LiverRef | Liver mRNA expression and DNAm reference matrix |
| lung10Xmca1 | Lung scRNA-Seq atlas 10X from Mouse Cell Atlas-1 |
| LungRef | Lung mRNA expression and DNAm reference matrix |
| lungSS2mca1 | Lung scRNA-Seq atlas SmartSeq2 from Mouse Cell Atlas-1 |
| OEref | Olfactory epithelium (OE) mRNA expression and DNAm reference... |
| PancreasRef | Pancreas mRNA expression and DNAm reference matrix |
| PancreasRef9ct | Pancreas9ct mRNA expression and DNAm reference matrix |
| probeInfo450k | Probe information for Illumina 450k DNAm beadarray |
| probeInfo850k | Probe information for Illumina 850k DNAm beadarray |
| probeInfoEPICv2 | Probe information for Illumina EPICv2 DNAm beadarray |
| ProstateRef | Prostate mRNA expression and DNAm reference matrix |
| SkinRef | Skin mRNA expression and DNAm reference matrix |
| testDNAm | Simulated in-silico mixture DNAm dataset |
| wRPC | Estimation of cell-type fractions using a DNAm reference... |
