probeInfo850k: Probe information for Illumina 850k DNAm beadarray

In aet21/EpiSCORE: Epigenetic cell-type deconvolution with Single-Cell Omic References

Probe information for Illumina 850k DNAm beadarray

Description

The list contains entries describing probeID, probe design-type, gene regulatory region (1=TSS1500, 2=TSS200, 3=5UTR, 4=1st Exon, 5=Body, 6=3UTR), if in a CpG island or not, the type of cytosine (CpG vs non-CpG), and Entrez gene ID.

Usage

data(probeInfo850k)

Format

A list containing required information for all probes on the Illumina 850k platform.

Details

A list object probeInfo850k.lv with following entries:

• probeID: probe IDs

• design: probe design type

• GeneGroup: gene regulatory region

• CGIgroup: relation to CpG island

• CG: CpG or non-CpG

• EID: Entrez gene ID

References

Zhu T, Breeze CE, Beck S, Teschendorff AE Cell-type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data Submitted.

aet21/EpiSCORE documentation built on June 26, 2022, 5:50 p.m.