hex_to_cnv: Convert SBE19plus V2 hex files to cnv

In afsc-gap-products/gapctd: Process CTD data from bottom trawl surveys

Convert SBE19plus V2 hex files to cnv

Description

This function decodes hexadecimal-formatted Sea-Bird CTD files to cnv files.

Usage

hex_to_cnv(
  hex_path,
  output_path,
  xmlcon_path = NULL,
  sample_interval = 0.25,
  output_channels = NULL,
  output_sig_digits = NULL
)

Arguments

hex_path	Path to a .hex file
output_path	Path to the output file location for a .cnv file
xmlcon_path	Optional. Path to config file. Must be provided if .hex file does not contain configuration file parameters.
sample_interval	Sampling interval for scans; 0.25 for a typical SBE19plus V2 deployment.
output_channels	Optional. Named vector of output channels and their names. Do not use unless outputs are are not the defaults.
output_sig_digits	Optional. Significant digits after the decimal place for output channels. Only change if a subset of channels. Do not use unless outputs are are not the defaults.

Author(s)

Sean Rohan

Examples

# Convert SBE19plus CTD .hex file to .cnv 

library(gapctd)

hex_to_cnv(hex_path = system.file("./extdata/example/SBE19plus_01908106_2023_06_19_0001.hex", package = "gapctd"),
           xmlcon_path = system.file("./extdata/example/SBE19plusV2_8106_ph_DO_leg2.xmlcon", package = "gapctd"),
           output_path = "SBE19plus_01908106_2023_06_19_0001_raw.cnv")

afsc-gap-products/gapctd documentation built on March 5, 2025, 3:42 a.m.