Files in agapow/subtypr
Robust and Validated Patient Subtyping for Precision Medicine

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/breast_cancer_data.R R/features_selection.R R/gbm_data.R R/generate.R R/methods.R R/methods_builder.R R/metrics.R R/metrics_builder.R R/preprocessing.R R/qc.R R/sparse_methylation.R R/tuning.R R/utils.R R/validate.R R/viz.R README.md build.R
data/breast_cancer_data.RData
data/gbm_data.RData
data/sparse_methylation.RData
inst/methods/methods.RData
inst/metrics/metrics.RData
inst/whythesefolders.txt
man/adjusted_rand_index.Rd man/analyze_survival.Rd man/breast_cancer_data.Rd man/check_distribution.Rd man/consensus_spectral_clustering.Rd man/dunn_index.Rd man/entropy.Rd man/evaluation.Rd man/flag_data.Rd man/gbm_data.Rd man/generate_multi_moclust.Rd man/generate_multi_structured.Rd man/generate_multi_unstructured.Rd man/generate_partitions.Rd man/generate_single_moclust.Rd man/generate_synth_data.Rd man/get_method.Rd man/get_metric.Rd man/hello.Rd man/homogeneity_completeness_vmeasure.Rd man/meila_vi.Rd man/metrics_list.Rd man/mutual_information.Rd man/normalized_mutual_information.Rd man/overview_metrics.Rd man/plot_affinity_matrix.Rd man/plot_clinical_features.Rd man/pre_process.Rd man/select_features.Rd man/select_mad.Rd man/select_pca.Rd man/select_variance.Rd man/silhouette_affinity.Rd man/silhouette_distance.Rd man/sparse_methylation.Rd man/subtype_anf.Rd man/subtype_pins.Rd man/subtype_snf.Rd man/tuning.Rd
notes.txt
subtypr.Rproj
tests/test_consensus_spectral_clustering.R tests/test_features_selection.R tests/test_generate.R tests/test_pins.R tests/test_plot_distance.R tests/test_silhouette.R tests/testthat.R tests/testthat/test_tuning.R
tests/tuning_anf.RData
tests/tuning_snf.RData
vignettes/data_processing.Rmd vignettes/introduction.Rmd vignettes/methods_comparison.Rmd
vignettes/methods_comparison_custom_cache/comparison_tuning_anf.RData
vignettes/methods_comparison_custom_cache/comparison_tuning_snf.RData
vignettes/methods_comparison_custom_cache/gbm_comparison_tuning_anf.RData
vignettes/methods_comparison_custom_cache/gbm_comparison_tuning_snf.RData
vignettes/methods_comparison_custom_cache/result_pins_gbm.RData
vignettes/regular_workflow.Rmd vignettes/tuning.Rmd
vignettes/tuning_custom_cache/result_tuning_1.RData
agapow/subtypr documentation built on Aug. 18, 2018, 10:37 p.m.