Files in agapow/subtypr
Robust and Validated Patient Subtyping for Precision Medicine
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/breast_cancer_data.R
R/features_selection.R
R/gbm_data.R
R/generate.R
R/methods.R
R/methods_builder.R
R/metrics.R
R/metrics_builder.R
R/preprocessing.R
R/qc.R
R/sparse_methylation.R
R/tuning.R
R/utils.R
R/validate.R
R/viz.R
README.md
build.R
data/breast_cancer_data.RData
data/gbm_data.RData
data/sparse_methylation.RData
inst/methods/methods.RData
inst/metrics/metrics.RData
inst/whythesefolders.txt
man/adjusted_rand_index.Rd
man/analyze_survival.Rd
man/breast_cancer_data.Rd
man/check_distribution.Rd
man/consensus_spectral_clustering.Rd
man/dunn_index.Rd
man/entropy.Rd
man/evaluation.Rd
man/flag_data.Rd
man/gbm_data.Rd
man/generate_multi_moclust.Rd
man/generate_multi_structured.Rd
man/generate_multi_unstructured.Rd
man/generate_partitions.Rd
man/generate_single_moclust.Rd
man/generate_synth_data.Rd
man/get_method.Rd
man/get_metric.Rd
man/hello.Rd
man/homogeneity_completeness_vmeasure.Rd
man/meila_vi.Rd
man/metrics_list.Rd
man/mutual_information.Rd
man/normalized_mutual_information.Rd
man/overview_metrics.Rd
man/plot_affinity_matrix.Rd
man/plot_clinical_features.Rd
man/pre_process.Rd
man/select_features.Rd
man/select_mad.Rd
man/select_pca.Rd
man/select_variance.Rd
man/silhouette_affinity.Rd
man/silhouette_distance.Rd
man/sparse_methylation.Rd
man/subtype_anf.Rd
man/subtype_pins.Rd
man/subtype_snf.Rd
man/tuning.Rd
notes.txt
subtypr.Rproj
tests/test_consensus_spectral_clustering.R
tests/test_features_selection.R
tests/test_generate.R
tests/test_pins.R
tests/test_plot_distance.R
tests/test_silhouette.R
tests/testthat.R
tests/testthat/test_tuning.R
tests/tuning_anf.RData
tests/tuning_snf.RData
vignettes/data_processing.Rmd
vignettes/introduction.Rmd
vignettes/methods_comparison.Rmd
vignettes/methods_comparison_custom_cache/comparison_tuning_anf.RData
vignettes/methods_comparison_custom_cache/comparison_tuning_snf.RData
vignettes/methods_comparison_custom_cache/gbm_comparison_tuning_anf.RData
vignettes/methods_comparison_custom_cache/gbm_comparison_tuning_snf.RData
vignettes/methods_comparison_custom_cache/result_pins_gbm.RData
vignettes/regular_workflow.Rmd
vignettes/tuning.Rmd
vignettes/tuning_custom_cache/result_tuning_1.RData
