data-raw/ora_example.R
In ahmohamed/vissEServerRpkg: Wrapping functions for vissE server to use
genes = readRDS("data-raw/emt_allg.rds") |>
dplyr::filter(gene_biotype %in% 'protein_coding', FDR < 0.01)
readr::write_csv(genes, 'data-raw/ora/genes_table.csv')
ora_example = ora(.silent=FALSE, genes$gene_name, collections = c('CP:REACTOME', 'CP:BIOCARTA', 'CP:PID', 'CP:KEGG', 'CP:WIKIPATHWAYS', 'h', 'GO:BP', 'GO:CC', 'GO:MF'))
usethis::use_data(ora_example, overwrite = TRUE)
jsonlite::write_json(jsonlite::fromJSON(ora_example), '../examples/ora.json')
ahmohamed/vissEServerRpkg documentation built on June 2, 2023, 6:58 p.m.
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genes = readRDS("data-raw/emt_allg.rds") |>
dplyr::filter(gene_biotype %in% 'protein_coding', FDR < 0.01)
readr::write_csv(genes, 'data-raw/ora/genes_table.csv')
ora_example = ora(.silent=FALSE, genes$gene_name, collections = c('CP:REACTOME', 'CP:BIOCARTA', 'CP:PID', 'CP:KEGG', 'CP:WIKIPATHWAYS', 'h', 'GO:BP', 'GO:CC', 'GO:MF'))
usethis::use_data(ora_example, overwrite = TRUE)
jsonlite::write_json(jsonlite::fromJSON(ora_example), '../examples/ora.json')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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