| Barandseqlogo | A function for generating barchart and seq-logo of co-factors... |
| BetaAdder | A function to merge Beta Score matrices to generate a single... |
| ConvertToFTRANSFAC | Generating proper matrix similar to TRANSFAC format of all... |
| Ensembles | A function for generating the object for TF in different cell... |
| ensemblesfunc | A function for exporting the motif matrix and augomenting it... |
| FPWMPlotter | A function for generating the forked Position Weight Matrix |
| MatrixAdder | A function to merge motif matrices to generate one matrix as... |
| ModifyBetaFormat | A function for converting Beta Score matrices into proper... |
| ObjectGenerator | A function togenerate a class object then assign proper data... |
| PlotMultiFTRANSFACFile | A function for storing .PDF of plots, by providing a .txt... |
| ReadFTRANSFACFile | A function for generating a class object from a local file in... |
| StoreFTRANSFACFile | Generation and storing a file of the standard TRANSFAC format |
| StoreMultiTRANSFACFile | Generating and storing a .txt file named "All.txt" which... |
| storeTRANSFAC | A function for storing TRANSFAC files of the forked matrices. |
| ToTFBSTools | A function for generating object of TFBStools holding PFM of... |
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