Barandseqlogo: A function for generating barchart and seq-logo of co-factors...

Description Usage Arguments

View source: R/Barchartandseqlogo.R

Description

This function generates a barchart of co-binding Percentage for each co-factor of selected TF, along with seq-logo for each of co-factors.

Usage

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(
  NumberofTop,
  highestscore,
  cell,
  TF,
  Local = FALSE,
  path = "",
  Methylation = FALSE
)

Arguments

NumberofTop

Number of top co-factors with higher co-binding Percentage to be illustrated

highestscore

Co-binding Percentage wich will be the minimum percentage of the shown co-factors.

cell

A character string, which is the name of cell under study.

TF

A character string which will be the Transcription Factor of interest.

Local

A logical value, which will read a local .CSV file in case of TRUE. The file should contain two columns: scores, columnnames which are the co-binding percentages and IDs respectively.

path

The path to .CSV file in case Local=TRUE.

Methylation

Is a logic argument which indicates if user wants Methylation Score to bu plotted on top of sequence logos or not.


aidaghayour/FPWM documentation built on June 15, 2020, 8:19 p.m.