View source: R/Barchartandseqlogo.R
This function generates a barchart of co-binding Percentage for each co-factor of selected TF, along with seq-logo for each of co-factors.
1 2 3 4 5 6 7 8 9 | Barandseqlogo(
NumberofTop,
highestscore,
cell,
TF,
Local = FALSE,
path = "",
Methylation = FALSE
)
|
NumberofTop |
Number of top co-factors with higher co-binding Percentage to be illustrated |
highestscore |
Co-binding Percentage wich will be the minimum percentage of the shown co-factors. |
cell |
A character string, which is the name of cell under study. |
TF |
A character string which will be the Transcription Factor of interest. |
Local |
A logical value, which will read a local .CSV file in case of TRUE. The file should contain two columns: scores, columnnames which are the co-binding percentages and IDs respectively. |
path |
The path to .CSV file in case Local=TRUE. |
Methylation |
Is a logic argument which indicates if user wants Methylation Score to bu plotted on top of sequence logos or not. |
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