make_novel_base_grobs: Create plots showing base usage at selected locations in...

In airr-community/ogrdbstats: Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics

Create plots showing base usage at selected locations in sequences based on novel alleles

Description

Create plots showing base usage at selected locations in sequences based on novel alleles

Usage

make_novel_base_grobs(inferred_seqs, input_sequences, segment, all_inferred)

Arguments

inferred_seqs	named list of novel gene sequences
input_sequences	the input_sequences data frame
segment	one of V, D, J
all_inferred	true if user has requested all alleles in reference set plotted - will suppress some warnings

Value

named list containing the following elements:

cdr3_dist	cdr3 length distribution plots
whole	whole-length usage plots
end	3' end usage plots
conc	3' end consensus composition plots
triplet	3' end triplet usage plots

Examples

base_grobs = make_novel_base_grobs(
                 example_rep$inferred_seqs,
                 example_rep$input_sequences,
                 'V',
                 FALSE
             )

airr-community/ogrdbstats documentation built on Feb. 17, 2025, 5:05 p.m.