plot: plot methods for mixOmics
In ajabadi/mixOmics2: Omics Data Integration Project

Description Usage Arguments Details Value Author(s) Examples

Plot the explained variances from a pca object

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## S3 method for class 'pca'
plot(x, ncomp = min(10, length(x$sdev)),
  type = "barplot", explained.var = TRUE, ...)

`x`	a `pca` object obtained from `pca` function.
`ncomp`	number of PCs to show.
`type`	type of the plot, either "barplot" or argument passed to `type` in base `plot`.
`explained.var`	logical. Whether to show proportion of variance explained (TRUE) or the total variance (FALSE).
`...`	other arguments passed to `plot`.

Creates a scree plot of explained variance by the study PCs.

A scree plot of explained variance by the study PCs.

Florian Rohart, Kim-Anh Lê Cao, Ignacio González, Al J Abadi plotIndiv, pca and http://www.mixOmics.org for more details.

#' \dontrun{
## successful: TRUE
## final: TRUE

library(mixOmics.data)
pca.res <- pca(multidrug$ABC.trans, ncomp = 10, scale = TRUE)
plot(pca.res)
#' }