tissueWiseANOVA: t-test on averages

Description Usage Arguments Details Value

Description

T-test on sample averages.

Usage

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tissueWiseANOVA(msset, setSamp = pData(msset)$sample,
  setCond = pData(msset)$diagnosis, setBioRep = NULL, logbase2 = F,
  statusUpdates = T)

Arguments

msset

An MSImageSet object.

setSamp

sample labels for msset

setCond

condition of interest labels for msset

setBioRep

(optional) biological replicate labels for msset

Details

T-test on sample averages. A separate average is produced for each combination of tissue and condition.

Value

The estimate(s) of variance, baseline, condition difference, and p-value for the test.


ajharry/msiCompare documentation built on May 28, 2019, 4:53 p.m.