simDiv: Simulate diversification on an adaptive landscape
In ajrominger/adaptive_landscape_div: Models of macroevolutionary diversifiation on adaptive landscapes
Description
Usage
Arguments
Details
Value
Author(s)
Description
Simulate diversification on an adaptive landscape
Usage
1
simDiv(la, mu, r, d, x0, opt0, bsd, ngen)
Arguments
la
function of position in the landscape giving birth rate at that point
mu
function of position in the landscape giving death rate at that point
r
the rate of evolutionary movement in the landscape
d
the critical distance past which a new species is generated
x0
initial trait value of the initializing population
opt0
initial optimal value in the adaptive landscape
bsd
SD of the Brownian drift of the adaptive optimum
ngen
number of generations over which to run the simulation
Details
The adaptiveness of the landscape is determined by the functions la and mu
which capture how speciation and extinction change as a function of position in the landscape
la, mu, r, d, x0, opt0, bsd, ngen
Value
A phylogeny with tip labels and edge length are derived from the input matrix
Author(s)
Andy Rominger <ajrominger@gmail.com>
ajrominger/adaptive_landscape_div documentation built on Nov. 1, 2019, 9:05 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Simulate diversification on an adaptive landscape
Usage
1 | simDiv(la, mu, r, d, x0, opt0, bsd, ngen)
|
Arguments
la |
function of position in the landscape giving birth rate at that point |
mu |
function of position in the landscape giving death rate at that point |
r |
the rate of evolutionary movement in the landscape |
d |
the critical distance past which a new species is generated |
x0 |
initial trait value of the initializing population |
opt0 |
initial optimal value in the adaptive landscape |
bsd |
SD of the Brownian drift of the adaptive optimum |
ngen |
number of generations over which to run the simulation |
Details
The adaptiveness of the landscape is determined by the functions la and mu
which capture how speciation and extinction change as a function of position in the landscape
la, mu, r, d, x0, opt0, bsd, ngen
Value
A phylogeny with tip labels and edge length are derived from the input matrix
Author(s)
Andy Rominger <ajrominger@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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