This project follows semantic versioning
coreAPI()
that was overwriting coreAPI
configuration
values with environment variables. Renamed username
and password
configuration values to api_username
and api_password
to ensure
compatibility with the prohibited environment variables
of RStudio-Connect.getAttachedAttributeFile()
to use the odata options available in PFS v6. createExperimentContainer()
to warn the user when accessing a published experiment.updateEntityLocation()
to use the InventoryMove action available
in the PFS OData API.# Completed regression for 5.3.8 and 6.0.1
message from tests. packrat
dependencies with newer minor versions.pfsrsdk
against PFS 5.3.10.apiGET()
and verbose is
set to true.odataCleanName()
added an underscore to the tenant alias
name. (new parameter added for odataCleanName()
)setup.R
to minimize test output.test-httpFunctions.R
(GET, POST, PUT) for more than 100
results.xml2
as an import since we use the httr::content()
with an XML MIME
type. httr
only lists xml2
as "Suggest" in its DESCRIPTION
.PFSRSDK 1.0.0 is a major release that completely refactors the CoreAPIV2
project into the new naming convention, pfsrsdk
, while updating the SDK
functions for compatibility with Platform for Science (PFS) versions 5.3.8,
5.3.9, 6.0.1, and 6.0.2. Unit tests have been added to cover nearly all SDK
functions and executed successfully against the listed PFS versions.
coreapiv2
changed to pfsrsdk
.CoreAPIV2::functionName()
are now called by
pfsrsdk::functionName()
.coreAPI.R
function, where the authentication parameters present in a
user's Auth.json
configuration file need to be updated:alias
(previously TenantShortName
)tenant
(previously account
)host
(previously coreUrl
)username
(previously user
)password
(previously pwd
)semver
, a new parameter for PFS semantic version that throws a warning if
not configuredgetAttachedFile
for getAttachedAttributeFile
.getExperimentSamplesIntermediateData
for
getExperimentSampleIntermediateData
.ODATAcleanName
for odataCleanName
.setExperimentSamplesAssayFileData
for
setExperimentSampleAssayFileData
.updateCellContents
for existing setCellContents
function, as
the latter provides the same functionality via PFS OData that the former
executes in the PFS JSON API.getSemVer
function to test the PFS semantic version being used and
adapt commands when necessary.getExperimentContainerContents
to get any container contents of
EXPERIMENT_CONTAINER base type.getExperimentContainerCellIds
to get cell Ids of experiment
containers.getExperimentWellContents
to retrieve contents of a specific well in
any experiment container.case
utility function to provide vectorized IF operations.packrat
to package structure for dependency management.styler
to enforce clean code syntax.lintr
as a tool for static code analysis.serviceRoot
to coreAPI to enable SDK use against Platform Admin.getContainerContents
to handle generic CONTAINER contents requests.loadXmlConfigFile
utility function to help prepare PFS test
environments by loading application configuration files (internal calls only).setup.r
and teardown.r
for tests. setup
will now load the
CoreApp.SDK
XML in a test environement, and teardown
hides information
that is not needed during log out. getWellContents
to handle generic CONTAINER well content requests.helper.r
to execute against specific-version test environments
without interactive prompting.Add the following code to your website.
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