The package recieves from user fastq files of sequenced reads from 4C experiments, the data is then analyzed and transformed into raw data files, p-score files, and more... The data could then be compared to RNA-seq data in order to determine any relationship between it and the 4C data. Several plots, and calculations regarding different statistics about the data are created. The package organizes the data that is input and created, and logs are recorded for later review ability to follow the anaylsis processes. The user works through menus and having to answer several questions in order to procceed with each step, starting with a main menu. The user is able to stop work at any point and continue from the same step left off.
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