Files in akivab2/Analyze4CPackage

Analysis Of 4C Data

.Rbuildignore

.gitignore

Analyze4CPackage.Rproj

DESCRIPTION

NAMESPACE

R/Analyze4C.R R/Analyze4C_alt.R R/CO_compare.R R/ChIPSeqCorContacts.R R/ChIPSeqCorContacts_forReads.R R/ChIPSeqVSContacts_quantiles.R R/ChIPseq_Tissue_comparison.R R/ChIPseq_aligner.R R/FDR.R R/FDR_COper_finder.R R/FDR_COper_finder_nokb.R R/FDR_calculator.R R/FDR_calculator_nokb.R R/FDR_main.menu.R R/FDR_noPrint.R R/FDR_nokb.R R/FDR_nokb_noPrint.R R/FDR_window_cmp.R R/FDR_window_cmp_nokb.R R/RE.file.creator.R R/RE.per.bp.R R/RE_window_compare.R R/Randomize_rawData.R R/aligner.R R/calculate.pScore.R R/calculate_quantiles.R R/chrom_sizes_fileCreator.R R/combineLanes.R R/contactBands.R R/contactBands_byChrom.R R/cov.remover.R R/coverage.changer.main_menu.R R/coverageChanger_byMinReads.R R/coverageChanger_chrChooser.R R/coverageVSmin_linePlot.R R/coverage_change_tester.R R/coverage_change_tester2.R R/createORget_Experiments_4C.R R/createRoot.R R/create_perl_files.R R/distribution_plotter.R R/expression_Tissue_comparison.R R/extract_reads.R R/findIn.Experiments_4C.R R/main.menu.R R/main.menu_alt.R R/makeContactBands.mainMenu.R R/mcnemar_tester.R R/pScore.R R/pScore_nokb.R R/rawData.creator.R R/rawData.stats.R R/rawData_rearranger.R R/remove_coverage_byReads.R R/remove_translocated.R R/rnaSeqCorContacts.R R/rnaSeqCorContacts_forReads.R R/rnaSeqVSContacts_quantiles.R R/rnaSeq_aligner.R R/setTOroot.R R/tissue_ChIPseq_comparison.R R/tissue_Expression_comparison.R R/venn_creator.R

inst/extdata/EOL_tab_adder.pl

inst/extdata/add_inds.pl

inst/extdata/edit_notAligned.pl

inst/extdata/precisionRecallFmeasure.pl

inst/extdata/seq_assignRE.pl

inst/extdata/sgr_to_bed.pl

akivab2/Analyze4CPackage documentation built on May 6, 2019, 11:45 a.m.