Files in alan-turing-institute/DetectorChecker
A package for analysing pixel damage in CT Scanners
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
JOSS-paper/ARCHIVE/figure2.png
JOSS-paper/ARCHIVE/figure3.png
JOSS-paper/ARCHIVE/figure4.png
JOSS-paper/ARCHIVE/figure5.png
JOSS-paper/ARCHIVE/figure6.png
JOSS-paper/ARCHIVE/figure7.png
JOSS-paper/Figures.R
JOSS-paper/Makefile
JOSS-paper/image/combined1.png
JOSS-paper/image/combined2.png
JOSS-paper/image/combined3.png
JOSS-paper/image/fig2-a.pdf
JOSS-paper/image/fig2-b-trim.png
JOSS-paper/image/fig2-b.png
JOSS-paper/image/fig3-a.pdf
JOSS-paper/image/fig3-b.pdf
JOSS-paper/image/fig4-a.pdf
JOSS-paper/image/fig4-b.pdf
JOSS-paper/image/figure1.png
JOSS-paper/image/figure2.png
JOSS-paper/image/figure3.png
JOSS-paper/image/figure4.png
JOSS-paper/image/flowchartDCshort.pdf
JOSS-paper/old-figure-stuff.txt
JOSS-paper/paper.bib
JOSS-paper/paper.md
JOSS-paper/paper.pdf
LICENSE
NAMESPACE
R/analysis.R
R/clump.R
R/io.R
R/layout.R
R/module.R
R/pixel.R
R/plots.R
R/utils.R
README.md
codemeta.json
data/Excalibur_exp_1.rda
data/PerkinElmerCropped_exp_1.rda
data/PerkinElmerCropped_exp_2.rda
data/PerkinElmerFull_exp_1.rda
data/PerkinElmerFull_exp_2.rda
data/PerkinElmerRefurbished_exp_1.rda
data/PerkinElmerRefurbished_exp_2.rda
data/Pilatus_exp_1.rda
detectorchecker.Rproj
development_docs/convenience_scripts/generate_data_files.R
development_docs/generating_documentation.md
development_docs/included_data.md
development_docs/testing builds.md
docs/_config.yml
docs/detectorchecker_1.0.8.pdf
inst/CITATION
inst/extdata/Excalibur/pixelmask.fem1.hdf
inst/extdata/Excalibur/pixelmask.fem2.hdf
inst/extdata/Excalibur/pixelmask.fem3.hdf
inst/extdata/Excalibur/pixelmask.fem4.hdf
inst/extdata/Excalibur/pixelmask.fem5.hdf
inst/extdata/Excalibur/pixelmask.fem6.hdf
inst/extdata/PerkinElmerCropped/BadPixelMap_t1.bpm.xml
inst/extdata/PerkinElmerCropped/BadPixelMap_t2.bpm.xml
inst/extdata/PerkinElmerFull/BadPixelMap_t1.bpm.xml
inst/extdata/PerkinElmerFull/BadPixelMap_t2.bpm.xml
inst/extdata/PerkinElmerRefurbished/BadPixelMap_t1.bpm.xml
inst/extdata/PerkinElmerRefurbished/BadPixelMap_t2.bpm.xml
inst/extdata/Pilatus/badpixel_mask.tif
inst/extdata/README.md
inst/extdata/user-defined/irregular/badpixelmap_irregular.xml
inst/extdata/user-defined/irregular/layout_par_irregular.txt
inst/extdata/user-defined/photographic/badpixelmap_photographic_hom.xml
inst/extdata/user-defined/photographic/badpixelmap_photographic_inhom.xml
inst/extdata/user-defined/photographic/layout_par_photographic.txt
inst/extdata/user-defined/photographic/photographic.tif
inst/img/DetectorChecker.png
logo_hex.png
man/Dead_Stats.Rd
man/Excalibur_Detector.Rd
man/PerkinElmerCropped1600_Detector.Rd
man/PerkinElmerFull_Detector.Rd
man/PerkinElmerRefurbished_Detector.Rd
man/Pilatus_Detector.Rd
man/available_detectors.Rd
man/check_detector_avail.Rd
man/create_detector.Rd
man/dead_stats_summary.Rd
man/dist_corner.Rd
man/dist_edge_col.Rd
man/dist_edge_min.Rd
man/dist_edge_row.Rd
man/dot-Default_Detector.Rd
man/dot-assign_module.Rd
man/dot-assign_pixel_matrix.Rd
man/dot-check_clumps.Rd
man/dot-check_select.Rd
man/dot-classify_clump.Rd
man/dot-clump_module.Rd
man/dot-create_ppp_edges_col.Rd
man/dot-create_ppp_edges_row.Rd
man/dot-create_ppp_gaps_col.Rd
man/dot-create_ppp_gaps_row.Rd
man/dot-dead_pix_coords.Rd
man/dot-derive_detector.Rd
man/dot-detector_consist_check.Rd
man/dot-detector_edges.Rd
man/dot-dist_closest_edge.Rd
man/dot-dist_edge.Rd
man/dot-extract_detector_parameter.Rd
man/dot-extract_number.Rd
man/dot-get_clump_event_ppp.Rd
man/dot-get_clump_pixel_ppp.Rd
man/dot-get_detector_ppps.Rd
man/dot-get_events_mask.Rd
man/dot-get_ppp_dead_module.Rd
man/dot-getmode.Rd
man/dot-ini_graphics.Rd
man/dot-mask_to_events.Rd
man/dot-matrix_from_hdf.Rd
man/dot-matrix_from_tiff.Rd
man/dot-matrix_from_xml.Rd
man/dot-norm_vec.Rd
man/dot-perform_glm.Rd
man/dot-plot_angles.Rd
man/dot-plot_arrows.Rd
man/dot-plot_counts.Rd
man/dot-plot_density.Rd
man/dot-plot_kfg.Rd
man/dot-plot_pixel.Rd
man/dot-tr.Rd
man/dot-xyc_pixels2events.Rd
man/dot-xyc_ply_func.Rd
man/find_clumps.Rd
man/get_dead_pix_mask.Rd
man/get_dead_stats.Rd
man/get_events_matrix.Rd
man/get_ppp_dead.Rd
man/glm_events_ctr_eucl.Rd
man/glm_events_ctr_linf.Rd
man/glm_events_dist_corner.Rd
man/glm_events_dist_edge_col.Rd
man/glm_events_dist_edge_min.Rd
man/glm_events_dist_edge_row.Rd
man/glm_pixel_ctr_eucl.Rd
man/glm_pixel_ctr_linf.Rd
man/glm_pixel_dist_corner.Rd
man/glm_pixel_dist_edge_col.Rd
man/glm_pixel_dist_edge_min.Rd
man/glm_pixel_dist_edge_row.Rd
man/is.detector.Rd
man/load_pix_matrix.Rd
man/pixel_dist_ctr_eucl.Rd
man/pixel_dist_ctr_linf.Rd
man/plot.detector.Rd
man/plot_events.Rd
man/plot_events_angles.Rd
man/plot_events_arrows.Rd
man/plot_events_count.Rd
man/plot_events_density.Rd
man/plot_events_kfg.Rd
man/plot_module_events.Rd
man/plot_module_pixels.Rd
man/plot_pixel_ctr_eucl.Rd
man/plot_pixel_ctr_linf.Rd
man/plot_pixel_dist_corner.Rd
man/plot_pixel_dist_edge.Rd
man/plot_pixel_dist_edge_col.Rd
man/plot_pixel_dist_edge_row.Rd
man/plot_pixels.Rd
man/plot_pixels_angles.Rd
man/plot_pixels_arrows.Rd
man/plot_pixels_count.Rd
man/plot_pixels_density.Rd
man/plot_pixels_kfg.Rd
man/readin_detector.Rd
man/remove_high_density_cluster.Rd
man/summary.detector.Rd
man/which_module.Rd
man/which_module_idx.Rd
packrat/init.R
packrat/packrat.opts
tests/testthat.R
tests/testthat/test_analysis.R
tests/testthat/test_clumps.R
tests/testthat/test_io.R
tests/testthat/test_layout.R
tests/testthat/test_pixel.R
tests/testthat/user-defined.txt
tests/testthat/utils.R
vignettes/DetectorChecker_user-guide.Rmd
vignettes/DetectorChecker_user-guide.html
vignettes/layoutDrawingPar.png
