Man pages for alan-turing-institute/DetectorChecker
A package for analysing pixel damage in CT Scanners
| available_detectors | A list of available preconfigured detectors. These can be... |
| check_detector_avail | Checks whether 'detector_name' is preconfigured. |
| create_detector | Create a Detector object |
| Dead_Stats | A list to represent dead pixels statistics summary. Added to... |
| dead_stats_summary | Summary of damaged pixels for a given detector |
| dist_corner | A function to calculate pixel distances from the closest... |
| dist_edge_col | Calculate horizontal distance from each pixel to nearest... |
| dist_edge_min | Calculate L-infinity distance to module edge |
| dist_edge_row | Calculate vertical distance from each pixel to nearest module... |
| dot-assign_module | Pixel module Function assign a module to each dead pixel |
| dot-assign_pixel_matrix | Assign dead pixels to a detector |
| dot-check_clumps | Checks if correct clumps were found. If not, finds clumps |
| dot-check_select | Checks if the selected row and column are within the... |
| dot-classify_clump | Clasifies a clump |
| dot-clump_module | Identifying modules for clumps |
| dot-create_ppp_edges_col | This is the ppp_edges_col creation function |
| dot-create_ppp_edges_row | This is the create_ppp_edges_row creation function |
| dot-create_ppp_gaps_col | Creates ppp object of horizontal gaps |
| dot-create_ppp_gaps_row | Creates ppp object of vertical gaps |
| dot-dead_pix_coords | Extracts a table of dead pixel coordinates from a pixel... |
| dot-Default_Detector | Detector module A S3 class to represent a detector. |
| dot-derive_detector | Deriving additional detector elements Conditions additional... |
| dot-detector_consist_check | Basic checks if parameters entered (slightly redundant on... |
| dot-detector_edges | Defines the coordinates of detector's edges using module and... |
| dot-dist_closest_edge | A function to calculate closest distance to an edge for a... |
| dot-dist_edge | Function returns distance of a pixel to module edges. |
| dot-extract_detector_parameter | Checks whether a detector parameter is in the file string |
| dot-extract_number | Internal function to convert string values to numbers |
| dot-get_clump_event_ppp | Creates ppp object for damaged detector events |
| dot-get_clump_pixel_ppp | Creates ppp object for damaged detector pixels |
| dot-get_detector_ppps | Generate detector ppps for edges and gaps |
| dot-get_events_mask | Generates events mask (a matrix with pixels as 0 and events... |
| dot-getmode | Returns the mode of a set of data |
| dot-get_ppp_dead_module | Generates ppp for the dead pixels for a selected module |
| dot-ini_graphics | Starts the graphics device driver for producing graphics with... |
| dot-mask_to_events | Converts mask (dead pixels) to events |
| dot-matrix_from_hdf | Reads in hdf file(s) and returns a pixel matrix |
| dot-matrix_from_tiff | I/O module Reads in tiff file and returns a pixel matrix |
| dot-matrix_from_xml | Reads in xml file and returns a pixel matrix |
| dot-norm_vec | Estimates the norm of a vector |
| dot-perform_glm | A simple wrapper around 'glm()' with family = binomial(link =... |
| dot-plot_angles | Plots nearest neighbor angles |
| dot-plot_arrows | Plots nearest neighbor oriented arrows |
| dot-plot_counts | Plots dead pixel counts |
| dot-plot_density | Plots module Plots density |
| dot-plot_kfg | Plots K, F, G functions |
| dot-plot_pixel | Plots pixel distance analysis |
| dot-tr | Utils module Calculates the trace value of a square matrix |
| dot-xyc_pixels2events | Modifying clusters to events (consisting of 1 pixel... |
| dot-xyc_ply_func | Clasifies clumps with respect to xy coordinates. |
| Excalibur_Detector | A S3 class to represent the Excalibur detector. |
| find_clumps | Locates and classifies clumps (Events) of damaged pixels in a... |
| get_dead_pix_mask | Creates a mask matrix of dead pixels |
| get_dead_stats | Generate summary of damaged pixels and add as a dead_stats... |
| get_events_matrix | Generates events matrix for selected events |
| get_ppp_dead | Generates point pattern dataset (ppp) for the dead pixels |
| glm_events_ctr_eucl | Fits events distances from the centre using glm |
| glm_events_ctr_linf | Fits events parallel maxima from the centre using glm |
| glm_events_dist_corner | Fits events distances to the nearest corner using glm |
| glm_events_dist_edge_col | Fits events distances from the module edges by column using... |
| glm_events_dist_edge_min | Fits events distances to the nearest sub-panel edge using glm |
| glm_events_dist_edge_row | Fits events distances from the module edges by row using glm |
| glm_pixel_ctr_eucl | Predict dead pixels from the pixel's euclidean distance from... |
| glm_pixel_ctr_linf | Predict dead pixels from the pixel's parallel maxima |
| glm_pixel_dist_corner | Predict dead pixels from pixel distances to the nearest... |
| glm_pixel_dist_edge_col | Predict dead pixels from pixel distances from the module... |
| glm_pixel_dist_edge_min | Predict dead pixels from pixel distances to the nearest... |
| glm_pixel_dist_edge_row | Predict dead pixels from pixel distances from the module... |
| is.detector | Check that 'x' is an S3 detector class |
| load_pix_matrix | A function to load pixel data and set as attribute on a... |
| PerkinElmerCropped1600_Detector | A S3 class to represent the PerkinElmerCropped1600 detector. |
| PerkinElmerFull_Detector | A S3 class to represent the PerkinElmerFull detector. |
| PerkinElmerRefurbished_Detector | A S3 class to represent the PerkinElmerRefurbished detector. |
| Pilatus_Detector | A S3 class to represent the PerkinElmerRefurbished detector. |
| pixel_dist_ctr_eucl | Calculate euclidean distance from the center of a module for... |
| pixel_dist_ctr_linf | Calculate parallel maxima from the centre for each pixel |
| plot.detector | Plot detector |
| plot_events | Plots damaged detector events |
| plot_events_angles | Plots angles graph of events of a detector or module |
| plot_events_arrows | Plots arrows graph of events of a detector or module |
| plot_events_count | Plots events count per detector or module |
| plot_events_density | Plots density graph of events of a detector or module |
| plot_events_kfg | Plots K, F, G functions of a detector or module |
| plot_module_events | Plots damaged detector module events |
| plot_module_pixels | A function to plot detector module with damaged pixels |
| plot_pixel_ctr_eucl | Calculates and plots pixel euclidean distance from the centre |
| plot_pixel_ctr_linf | Calculates and plots pixel parallel maxima from the centre |
| plot_pixel_dist_corner | Calculates and plots pixel distances from corners |
| plot_pixel_dist_edge | Calculates and plots L-infinity distances from the module... |
| plot_pixel_dist_edge_col | Calculates and plots horizontal distances from the module... |
| plot_pixel_dist_edge_row | Calculates and plots vetical distances from the module edges |
| plot_pixels | A function to plot detector with damaged pixels overlayed |
| plot_pixels_angles | Plot nearest neighbour angles of dead pixels of detector or... |
| plot_pixels_arrows | A function to plot NN oriented arrows of dead pixels of... |
| plot_pixels_count | A function to plot detector with dead pixel counts per module |
| plot_pixels_density | A function to plot densities of dead pixels of detector or... |
| plot_pixels_kfg | Plots K, F, G functions |
| readin_detector | Reads in a user defined detector from a file |
| remove_high_density_cluster | Remove high density cluster of dead pixels |
| summary.detector | Summary of a detector object |
| which_module | Module module Returns row or column of a module that a dead... |
| which_module_idx | Function returns both col and row number of a dead pixel. |
