netemd.plot: Heatmap of NetEmd many-to-many comparisons

In alan-turing-institute/network-comparison: An implementation of the NetEMD alignment-free network distance measure

Heatmap of NetEmd many-to-many comparisons

Description

Provides a heatmap and dendrogram for the network comparisons via pheatmap.

Usage

netemd.plot(
  netemdlist,
  clustering_method = "ward.D",
  main = "NetEmd",
  docluster = TRUE
)

Arguments

clustering_method	Clustering method as allowed in the pheatmap function from the pheatmap package. The dendrogram will appear if docluster is TRUE (default).
main	Title of the plot.
docluster	controls the order of the rows and columns. If TRUE (default) the rows and columns will be reordered to create the dendrogram. If FALSE, then only the heatmap is drawn.
netdislist	Default output of netdis_many_to_many.
whatrow	Selection of the row in netdis_many_to_many$comp_spec to be used for plotting.

Value

Provides a heat map and dendrogram for the network comparisons via pheatmap.

alan-turing-institute/network-comparison documentation built on June 7, 2022, 10:41 p.m.