Files in alan-turing-institute/network-comparison
An implementation of the NetEMD alignment-free network distance measure

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R R/data.R R/dhist.R R/emd.R R/graph_binning.R R/measures_net_dis.R R/measures_net_emd.R R/netdist_package.R R/orca_interface.R R/utility_functions.R README.md
appveyor.yml
data-raw/virus.R
data/virusppi.rda
inst/extdata/VRPINS/EBV.txt
inst/extdata/VRPINS/ECL.txt
inst/extdata/VRPINS/HSV-1.txt
inst/extdata/VRPINS/KSHV.txt
inst/extdata/VRPINS/VZV.txt
inst/extdata/random/BA_1250_10_1
inst/extdata/random/BA_1250_10_2
inst/extdata/random/BA_1250_10_3
inst/extdata/random/BA_5000_20_1
inst/extdata/random/BA_5000_20_2
inst/extdata/random/BA_5000_20_3
inst/extdata/random/DD1_1250_10_1
inst/extdata/random/DD1_1250_10_2
inst/extdata/random/DD1_1250_10_3
inst/extdata/random/DD1_5000_20_1
inst/extdata/random/DD1_5000_20_2
inst/extdata/random/DD1_5000_20_3
inst/extdata/random/DD2_1250_10_1
inst/extdata/random/DD2_1250_10_2
inst/extdata/random/DD2_1250_10_3
inst/extdata/random/DD2_5000_20_1
inst/extdata/random/DD2_5000_20_2
inst/extdata/random/DD2_5000_20_3
inst/extdata/random/ERDD_1250_10_1
inst/extdata/random/ERDD_1250_10_2
inst/extdata/random/ERDD_1250_10_3
inst/extdata/random/ERDD_5000_20_1
inst/extdata/random/ERDD_5000_20_2
inst/extdata/random/ERDD_5000_20_3
inst/extdata/random/ER_1250_10_1
inst/extdata/random/ER_1250_10_2
inst/extdata/random/ER_1250_10_3
inst/extdata/random/ER_5000_20_1
inst/extdata/random/ER_5000_20_2
inst/extdata/random/ER_5000_20_3
inst/extdata/random/GDD3D_1250_10_1
inst/extdata/random/GDD3D_1250_10_2
inst/extdata/random/GDD3D_1250_10_3
inst/extdata/random/GDD3D_5000_20_1
inst/extdata/random/GDD3D_5000_20_2
inst/extdata/random/GDD3D_5000_20_3
inst/extdata/random/Geo3D_1250_10_1
inst/extdata/random/Geo3D_1250_10_2
inst/extdata/random/Geo3D_1250_10_3
inst/extdata/random/Geo3D_5000_20_1
inst/extdata/random/Geo3D_5000_20_2
inst/extdata/random/Geo3D_5000_20_3
inst/extdata/random/WS_1250_10_1
inst/extdata/random/WS_1250_10_2
inst/extdata/random/WS_1250_10_3
inst/extdata/random/WS_5000_20_1
inst/extdata/random/WS_5000_20_2
inst/extdata/random/WS_5000_20_3
man/adaptive_breaks.Rd man/area_between_dhist_ecmfs.Rd man/area_between_offset_ecmfs.Rd man/as_smoothed_dhist.Rd man/as_unsmoothed_dhist.Rd man/binned_densities_adaptive.Rd man/cost_matrix.Rd man/count_graphlets_ego.Rd man/count_graphlets_ego_scaled.Rd man/count_graphlets_for_graph.Rd man/count_graphlets_per_node.Rd man/count_orbits_per_node.Rd man/counts_from_observations.Rd man/cross_comp_to_matrix.Rd man/cross_comparison_spec.Rd man/dhist.Rd man/dhist_ecmf.Rd man/dhist_from_obs.Rd man/dhist_from_obsSLOW.Rd man/dhist_mean_location.Rd man/dhist_std.Rd man/dhist_variance.Rd man/ecmf_knots.Rd man/emd.Rd man/emd_cs.Rd man/emd_lp.Rd man/equals-.dhist.Rd man/gdd.Rd man/gdd_for_all_graphs.Rd man/graph_features_to_histograms.Rd man/graph_to_indexed_edges.Rd man/graphlet_ids_for_size.Rd man/graphlet_key.Rd man/harmonise_dhist_locations.Rd man/indexed_edges_to_graph.Rd man/interval_index.Rd man/is_dhist.Rd man/is_numeric_vector_1d.Rd man/make_named_ego_graph.Rd man/mean_centre_dhist.Rd man/mean_density_binned_graphlet_counts.Rd man/min_emd.Rd man/min_emd_exhaustive.Rd man/min_emd_optimise.Rd man/net_emd.Rd man/net_emds_for_all_graphs.Rd man/netdis.Rd man/netdis_centred_graphlet_counts.Rd man/netdis_centred_graphlet_counts_ego.Rd man/netdis_expected_graphlet_counts.Rd man/netdis_expected_graphlet_counts_ego.Rd man/netdis_expected_graphlet_counts_ego_fn.Rd man/netdis_for_all_graphs.Rd man/normalise_dhist_mass.Rd man/normalise_dhist_variance.Rd man/orbit_key.Rd man/orbit_to_graphlet_counts.Rd man/read_simple_graph.Rd man/read_simple_graphs.Rd man/shift_dhist.Rd man/shift_to_next_alignment.Rd man/simplify_graph.Rd man/sort_dhist.Rd man/virusppi.Rd
network_comparison.Rproj
src/Makevars
src/RcppExports.cpp
src/counts_from_observations.cpp
tests/testthat.R tests/testthat/test_dhist.R tests/testthat/test_emd.R tests/testthat/test_graph_binning.R tests/testthat/test_measures_net_dis.R tests/testthat/test_measures_net_emd.R tests/testthat/test_orca_interface.R tests/testthat/test_utility_functions.R vignettes/Quick_start_net_dis.R vignettes/Quick_start_net_dis.Rmd
vignettes/Quick_start_net_dis.html
vignettes/Quick_start_net_emd.R vignettes/Quick_start_net_emd.Rmd
vignettes/Quick_start_net_emd.html
alan-turing-institute/network-comparison documentation built on May 4, 2018, 4:22 p.m.