plot.FitInactivationMCMC: Plot of FitInactivationMCMC Object

In albgarre/bioinactivation: Mathematical Modelling of (Dynamic) Microbial Inactivation

Plot of FitInactivationMCMC Object

Description

Plots a comparison between the experimental data provided and the prediction produced by the model parameters adjusted for an instance of FitInactivationMCMC.

Usage

## S3 method for class 'FitInactivationMCMC'
plot(
  x,
  y = NULL,
  ...,
  make_gg = TRUE,
  plot_temp = FALSE,
  label_y1 = "logN",
  label_y2 = "Temperature",
  ylims = NULL
)

Arguments

x	the object of class FitInactivation to plot.
y	ignored
...	additional arguments passed to plot.
make_gg	logical. If TRUE, the plot is created using ggplot2. Otherwise, the plot is crated with base R. TRUE by default.
plot_temp	logical. Whether the temperature profile will be added to the plot. FALSE by default.
label_y1	Label of the principal y-axis.
label_y2	Label of the secondary y-axis.
ylims	Numeric vector of length 2 with the Limits of the y-axis. NULL by default (0, max_count).

Value

If make_gg = FALSE, the plot is created. Otherwise, an an instance of ggplot is generated, printed and returned.

albgarre/bioinactivation documentation built on Nov. 27, 2022, 9:19 a.m.