rawEnrichmentAnalysis: Calculated raw xCell enrichment scores
In alex-pinto/xc: Cell type enrichment analysis
Description
Usage
Arguments
Value
Description
rawEnrichmentAnalysis Returns the raw xCell cell types enrichment scores.
Usage
1
2
rawEnrichmentAnalysis(expr, signatures, genes, file.name = NULL,
parallel.sz = 4)
Arguments
expr
the gene expression data set. A matrix with row names as symbols and columns as samples.
signatures
a GMT object of signatures.
genes
list of genes to use in the analysis.
file.name
string for the file name for saving the scores. Default is NULL.
parallel.sz
integer for the number of threads to use. Default is 4.
Value
the raw xCell scores
alex-pinto/xc documentation built on May 23, 2019, 6:02 p.m.
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Description Usage Arguments Value
Description
rawEnrichmentAnalysis Returns the raw xCell cell types enrichment scores.
Usage
1 2 | rawEnrichmentAnalysis(expr, signatures, genes, file.name = NULL,
parallel.sz = 4)
|
Arguments
expr |
the gene expression data set. A matrix with row names as symbols and columns as samples. |
signatures |
a GMT object of signatures. |
genes |
list of genes to use in the analysis. |
file.name |
string for the file name for saving the scores. Default is NULL. |
parallel.sz |
integer for the number of threads to use. Default is 4. |
Value
the raw xCell scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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