compute_null_params: compute_null_params
In alex-wenzel/ChromaSC-R: Plots gene set enrichment along a single cell RNA-seq linear pseudotime trajectory
View source: R/null_distr_params.R
Description
This function computes the null distribution parameters for the input dataset. Use
'save_null_params()' and 'load_null_params()' to skip this step for future analyses with the same
gene sets and data.
Usage
1
compute_null_params(expr_mat, gene_sets, n_random_cells = 50)
Arguments
expr_mat
A sparse Matrix object
gene_sets
Gene sets loaded with 'load_gene_sets()'
n_random_cells
The number of random cells to generate to calculate the null parameters
for each combination of cell size and gene set
alex-wenzel/ChromaSC-R documentation built on Nov. 1, 2019, 9:09 p.m.
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View source: R/null_distr_params.R
Description
This function computes the null distribution parameters for the input dataset. Use 'save_null_params()' and 'load_null_params()' to skip this step for future analyses with the same gene sets and data.
Usage
1 | compute_null_params(expr_mat, gene_sets, n_random_cells = 50)
|
Arguments
expr_mat |
A sparse Matrix object |
gene_sets |
Gene sets loaded with 'load_gene_sets()' |
n_random_cells |
The number of random cells to generate to calculate the null parameters for each combination of cell size and gene set |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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