alexchwong/NxtIRFcore: Core Engine for NxtIRF: a User-Friendly Intron Retention and Alternative Splicing Analysis using the IRFinder Engine
Interactively analyses Intron Retention and Alternative Splicing Events (ASE) in RNA-seq data. NxtIRF quantifies ASE events in BAM files aligned to the genome using a splice-aware aligner such as STAR. The core quantitation algorithm relies on the IRFinder/C++ engine ported via Rcpp for multi-platform compatibility. In addition, NxtIRF provides convenient pipelines for downstream analysis and publication-ready visualisation tools. Note that NxtIRFcore is now replaced by SpliceWiz in Bioconductor 3.16 onwards.
Getting started
Browse package contents
Package details |
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| Bioconductor views | AlternativeSplicing Coverage DifferentialSplicing RNASeq Software Transcriptomics |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.3.2 |
| URL | https://github.com/alexchwong/NxtIRFcore |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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