check.loci: Check which loci frequently have high Fst across training...

In alexkychen/assignPOP: Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework

Check which loci frequently have high Fst across training sets

Description

This function reads through training locus file for each assignment test and counts the frequency of those loci and outputs the results in a text file.

Usage

check.loci(dir = NULL, top.loci = 20)

Arguments

dir	A character string to specify the folder with your cross-validation results. A slash should be entered at the end.
top.loci	An integer to specify how many top informative loci to output.

Value

This function output the results in a text file. It includes the top N informative loci in N rows, and each row has a list of loci sorted by its occurrence.

alexkychen/assignPOP documentation built on March 18, 2024, 6:26 a.m.