oldCutplot.dendrogram: Plot Subtrees of a Dendrogram in Different Colors

In alexploner/Heatplus: Heatmaps with row and/or column covariates and colored clusters

Description

Plot a dendrogram, cut the tree at a given height, and draw the resulting subtrees in different colors (OLD version, to be deprecated)

Usage

oldCutplot.dendrogram(
  x,
  h,
  cluscol,
  leaflab = "none",
  horiz = FALSE,
  lwd = 3,
  ...
)

Arguments

x	a dendrogram.
h	the height at which the dendrogram is cut.
cluscol	the colors used for the subtrees; defaults to rainbow.
leaflab	indicates how leaf labels are to be drawn< defaults to 'perpendicular'.
horiz	logical indicating whether to plot the dendrogram horizontally or vertically.
lwd	the line width used for the color subtrees.
...	arguments to plot.dendrogram.

Details

This routine makes use of the functions plot.dendrogram and plotNode in package stats.

Author(s)

Alexander Ploner <[e-mail]>

See Also

as.dendrogram

Examples

## Not run: 
data(swiss)
cc = as.dendrogram(hclust(dist(swiss)))
oldCutplot.dendrogram(cc, h=80)

## End(Not run) 

alexploner/Heatplus documentation built on May 23, 2021, 2:01 p.m.