intersect_BEDPE: Intersect BEDPE list
In alextidd/tgp: Target Gene Prediction
View source: R/intersect_BEDPE.R
intersect_BEDPE R Documentation
Intersect BEDPE list
Description
Intersect BEDPE list object with SNPs and TSSs
Usage
intersect_BEDPE(bedpe, SNPend, TSSend)
Arguments
bedpe
A tibble BEDPE list object representing chromosomal interaction looping data
SNPend
A tibble BED of trait SNPs
TSSend
A tibble BED of gene TSSs
Value
A tibble BED of all interaction loops in which one end intersects with a SNP and the other end intersects with a TSS. The coordinates for the SNP
alextidd/tgp documentation built on June 1, 2022, 9:25 a.m.
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View source: R/intersect_BEDPE.R
| intersect_BEDPE | R Documentation |
Intersect BEDPE list
Description
Intersect BEDPE list object with SNPs and TSSs
Usage
intersect_BEDPE(bedpe, SNPend, TSSend)
Arguments
bedpe |
A tibble BEDPE list object representing chromosomal interaction looping data |
SNPend |
A tibble BED of trait SNPs |
TSSend |
A tibble BED of gene TSSs |
Value
A tibble BED of all interaction loops in which one end intersects with a SNP and the other end intersects with a TSS. The coordinates for the SNP
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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