cmap_var: Variance values for Connectivity Map build 02 drugs.
In alexvpickering/ccdata: Data for Combination Connectivity Mapping (ccmap) Package
Description
Usage
Format
Details
Value
References
Description
Variances of unbiased effect sizes values for all 1309 drugs in the
Connectivity Map build 02.
Usage
1
Format
An object of class matrix with 13832 rows and 1309 columns.
Details
Calculated as described by Marot et al (see reference) using toptable
from limma and effectsize from metaMA.
Value
A matrix where columns correspond to drugs and rows to gene symbols.
References
Marot G, Foulley JL, Mayer CD, Jaffrézic F. Moderated effect size and P-value
combinations for microarray meta-analyses. Bioinformatics. 2009 Oct
15;25(20):2692-9. doi: 10.1093/bioinformatics/btp444.
alexvpickering/ccdata documentation built on Oct. 2, 2020, 7:20 a.m.
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Description Usage Format Details Value References
Description
Variances of unbiased effect sizes values for all 1309 drugs in the Connectivity Map build 02.
Usage
1 |
Format
An object of class matrix with 13832 rows and 1309 columns.
Details
Calculated as described by Marot et al (see reference) using toptable
from limma and effectsize from metaMA.
Value
A matrix where columns correspond to drugs and rows to gene symbols.
References
Marot G, Foulley JL, Mayer CD, Jaffrézic F. Moderated effect size and P-value combinations for microarray meta-analyses. Bioinformatics. 2009 Oct 15;25(20):2692-9. doi: 10.1093/bioinformatics/btp444.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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