l1000_es: Effect size values for LINCS l1000 signatures.
In alexvpickering/ccdata: Data for Combination Connectivity Mapping (ccmap) Package
Description
Usage
Format
Details
Value
References
Description
Moderated unbiased effect sizes values for all 230829 LINCS l1000 signatures.
Usage
1
Format
An object of class matrix with 1001 rows and 230829 columns.
Details
Calculated as described by Marot et al (see reference) using toptable
from limma and effectsize from metaMA.
Value
A matrix where columns correspond to perturbagens and rows to gene symbols.
References
Marot G, Foulley JL, Mayer CD, Jaffrézic F. Moderated effect size and P-value
combinations for microarray meta-analyses. Bioinformatics. 2009 Oct
15;25(20):2692-9. doi: 10.1093/bioinformatics/btp444.
alexvpickering/ccdata documentation built on Oct. 2, 2020, 7:20 a.m.
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Description Usage Format Details Value References
Description
Moderated unbiased effect sizes values for all 230829 LINCS l1000 signatures.
Usage
1 |
Format
An object of class matrix with 1001 rows and 230829 columns.
Details
Calculated as described by Marot et al (see reference) using toptable
from limma and effectsize from metaMA.
Value
A matrix where columns correspond to perturbagens and rows to gene symbols.
References
Marot G, Foulley JL, Mayer CD, Jaffrézic F. Moderated effect size and P-value combinations for microarray meta-analyses. Bioinformatics. 2009 Oct 15;25(20):2692-9. doi: 10.1093/bioinformatics/btp444.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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