asmap_prog: Runs mstmap for a linkage groups of map objects that satisfy...
In alexwhan/genomap: A set of tools for working with raw genotype calls and genetic maps
Description
Runs mstmap for a linkage groups of map objects that
satisfy threshold criteria along sequence of p.values.
Intermediate results are kept to trace the point at which
linkage groups break.
Usage
1
asmap_prog(obj, comp, p.values = 10^-(c(5:10)), redo_threshold = 20)
Arguments
obj
A cross objects suitable for mstmap.
comp
A comparison object - currently unused
p.values
A decreasing vector of p.values between 0 and 1.
redo_threshold
Distance in cM. If a linkage group has a
gap large than this threshold, it will be recalculated in the next cycle.
alexwhan/genomap documentation built on May 10, 2019, 8:58 a.m.
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Description
Runs mstmap for a linkage groups of map objects that satisfy threshold criteria along sequence of p.values. Intermediate results are kept to trace the point at which linkage groups break.
Usage
1 | asmap_prog(obj, comp, p.values = 10^-(c(5:10)), redo_threshold = 20)
|
Arguments
obj |
A cross objects suitable for mstmap. |
comp |
A comparison object - currently unused |
p.values |
A decreasing vector of p.values between 0 and 1. |
redo_threshold |
Distance in cM. If a linkage group has a gap large than this threshold, it will be recalculated in the next cycle. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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