data_download: Download TCGA data from API
In alexyfyf/TCGA_workflow: Useful functions for TCGA (RNA-seq) data analysis
Description
Usage
Arguments
Value
Examples
View source: R/data_download.R
Description
Download TCGA data from API, using TCGAbiolinks package
Usage
1
data_download(cohort, datatype = "RNAseq")
Arguments
cohort
Character, e.g. TCGA-CHOL, please refer to GDC portal for proper abbreviations.
datatype
Character, now only support RNA-seq, e.g. RNA-seq/RNAseq
Value
List: including a DGEList object, and survival data
Examples
1
chol <- data_download("TCGA-CHOL", datatype="RNAseq")
alexyfyf/TCGA_workflow documentation built on March 19, 2020, 2:28 a.m.
R Package Documentation
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Description Usage Arguments Value Examples
View source: R/data_download.R
Description
Download TCGA data from API, using TCGAbiolinks package
Usage
1 | data_download(cohort, datatype = "RNAseq")
|
Arguments
cohort |
Character, e.g. TCGA-CHOL, please refer to GDC portal for proper abbreviations. |
datatype |
Character, now only support RNA-seq, e.g. RNA-seq/RNAseq |
Value
List: including a DGEList object, and survival data
Examples
1 | chol <- data_download("TCGA-CHOL", datatype="RNAseq")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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