plot_surv_gene: Plot survival curve for single gene

In alexyfyf/TCGA_workflow: Useful functions for TCGA (RNA-seq) data analysis

Description

Plot survival curve for single gene

Usage

plot_surv_gene(symbol, anno, count, surv, path)

Arguments

symbol	Character, gene symbol, character
anno	Dataframe, gene annotation file, output from TCGAbiolinks
count	Matrix, gene count matrix, output from TCGAbiolinks
surv	Dataframe, survival data
path	Character, path to plot

Value

summary statistics and plot

Examples

chol <- data_download("TCGA-CHOL", datatype="RNA-seq")
x <- chol$x
survinfo <- chol$surv
plot_surv_gene("TET2", x$genes, x$counts, survinfo, "./")

alexyfyf/TCGA_workflow documentation built on March 19, 2020, 2:28 a.m.