biodata: biodata

Description Usage Arguments Value Author(s)

Description

biodata is a function to instantiate a rAedesSim S3 object that contains to describes data collected during a field monitoring and ready to use to perform simulation verification.

Usage

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biodata(ID = "", parameter_definition = "Eggs", units = "Integer count",
  location = "", instrument = "Trappola REDLAV ITA", network = "Redlav",
  common_name = "Zanzara Tigre", scientific_name = "Aedes Albopictus",
  phenology = "Eggs Hatching", obs_standard = TRUE, sourcedata = NULL,
  data_provider = "ASL Lucca",
  data_maintaner = "Marco Selmi - m.selmi@usl2.toscana.it",
  data_licence = "", field_delimiter = ",", lat, lon,
  timezone = "Europe/Rome",
  CRS = "+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs", geonotes = "",
  urban = TRUE, nasa_radiance = NULL, census_level = NULL)

Arguments

ID

char character ID of monitoring.

parameter_definition

character Name or description of observative parameter collected. Default are Eggs.

units

character Indicate the measure unity of the paraemter observed.

location

character Name of site of observations.

instrument

character Name of engine to provide observation

network

character If data is collected inside an observative network.

common_name

character Data tipology - Observation - Sensor monitoring - Simulation

scientific_name

character Data tipology - Observation - Sensor monitoring - Simulation

phenology

character Data tipology - Observation - Sensor monitoring - Simulation

obs_standard

logical States if data belong to a phenology Data standard class es SYNOP

sourcedata

Matrix or Data.frame or ascii file of raw data.

data_provider

character Institution / Private data manager.

data_maintaner

character maintainer's name or contact or its contact .

data_licence

character Licence of data.

field_delimiter

character field delimiter of file. Default is comma ",".

lat

numeric latitude coordinates of where data are collected.

lon

numeric longitude coordinates of where data are collected.

timezone

character Timezone. Default is Europe/Rome.

CRS

character Projection of coordinate in proj4 format.

geonotes

character Annotations in regard to the contest of observation.

urban

logical Flag indicating if data belong to urban area. Automatic detection is done in according to UMZ Urban Morfological Zone EAA http://database.espon.eu. Default is TRUE.

nasa_radiance

numeric Night radiance value. Is a proxy for urbanity.

census_level

numeric Population density estimation by EEA data sources.

sourcedata

data.frame Or matrix or ascii file of raw data. Field required are dates and parameter.

elevation

numeric Elevation of the Default is 40.

Value

object Return a rAedesim object of class biodata

Author(s)

Istituto di Biometeorologia Firenze Alfonso Crisci a.crisci@ibimet.cnr.it ASL 2 LUCCA Marco Selmi marco.selmi@uslnordovest.toscana.it


alfcrisci/rAedesSim documentation built on May 10, 2019, 8:59 a.m.