Description Usage Arguments Value Author(s)
biocontainer is the function able to instantiate a S3 object used in rAedesSim simulation. The one is referred to the main features of the container where eggs are layed and larvae/pupae growth.
1 2 3 4 5 6 7 8 9 | biocontainer(type = "Trap REDLAV ITA", nrecipients = 1,
container_shape = 3, capacity = 1000, initVol = 750,
frac_initVol = 0.75, surface_area = 50, underplate = FALSE,
frac_underplate = 0, frac_covering = 0, lat = 43.5, lon = 11.27,
elevation = 100, timezone = "Europe/Rome",
CRS = "+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs",
sourcedata = NULL, meteodata = NULL, watermodel = NULL,
watermodel_fit = FALSE, model_type = "gam", date_format = "YMD",
field_delimiter = ",", ID = c("NA"), site_name = c("NA"))
|
type |
character Container type. The default trap used in REDLAV project is indicated: volume 0.75 750 cm^3 lt, heigth 13 cm, Area 50 cm^2.Describe the tipology of cointainer considered. For example (i) cointaner (ii) manhole (iii) others. |
nrecipients |
numeric Represent the numerosity of container used in simulation and correspond to BS the number of breeding sites . Default is 50. |
container_shape |
numeric Numeric level indicates if the surface container the shape . Parallelepiped plate (1) Cilynder plate(2) Unspecified (3). Default is 3. |
capacity |
numeric The maximum capacity of water in trap/container. Default ( 1 lt 1000 cm^3). |
initVol |
numeric The unitarian initial volume of water in trap/container. Default ( 0.75 lt 750 ml). |
frac_initVol |
numeric Fraction of volume present in trap/location. Default is 0. |
surface_area |
numeric The water-air surface of container in squared centimeter (cmq). |
underplate |
logical Presence of underplate. Default is FALSE. |
frac_underplate |
numeric Fraction of underplate engaged (0 - 1) Default is 0. |
frac_covering |
numeric Fraction of container covering (0 - 1) Default is 0. |
lat |
numeric Mean geographical latitude of container location. Default is 43.5. |
lon |
numeric Mean geographical longitude of container location. Default is 11.27. |
elevation |
numeric Mean elevation of container location. Default is 100. |
timezone |
sring Timezone. Default is "Europe/Rome". |
CRS |
character Projection of coordinate in proj4 format. |
sourcedata |
dataframe Or ascii file consisting in Water temperature measurements. Fields required are dates ( YYYY-MM-DD) format, Daily mean of water tmedwater. |
meteodata |
object rAedesim object with the data useful for model water calibration. |
watermodel |
logical Statistical model oject ( gam - lm - glm).Default is NULL. |
watermodel_fit |
logical Fit a statistical model oject ( gam - lm - glm).Default is FALSE. |
model_type |
character Statistical model class. |
date_format |
character Format of the dates in raw data. Default is YMD. |
field_delimiter |
character field delimiter of file. Default is comma ",". |
ID |
character ID of container's set. |
site_name |
character Name of place or location. |
daily_evap_loss |
numeric Volume of water losses daily due to evaporation. Default is 0. |
timeseries |
object xts R Timeseries of data |
biocontainer
Istituto di Biometeorologia Firenze Italy Alfonso crisci a.crisci@ibimet.cnr.it ASL 2 LUCCA Marco Selmi marco.selmi@uslnordovest.toscana.it
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