README.md
In alfredorago/FESTA: Flexible Exon-based Splicing and Transcription Annotation
FESTA
Flexible Exon-based Splicing and Transcription Annotation
The FESTA script allows the detection of new splicing events starting only from exon-based expression data.
The only input files required are a count table and an annotation table that matches each exon to a gene.
The output contains expression values for both the main gene and its isoform.
The latter can be further normalized to proportions of the total gene expression.
For more information, refer to the manuscript here:
https://t.co/x3fXoaO2JX
Installation
The package can be installed from R via devtools:
install.packages("devtools")
devtools::install_github("alfredorago/FESTA")
Usage
Typical usage includes running the function ClusterExons followed by AverageExons.
ClusterExons sorts exons within a gene in either constitutively expressed or alternatively expressed groups.
AverageExons calculate the expression of each exon group for downstream analysis.
alfredorago/FESTA documentation built on May 24, 2019, 9:50 a.m.
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FESTA
Flexible Exon-based Splicing and Transcription Annotation
The FESTA script allows the detection of new splicing events starting only from exon-based expression data. The only input files required are a count table and an annotation table that matches each exon to a gene. The output contains expression values for both the main gene and its isoform. The latter can be further normalized to proportions of the total gene expression. For more information, refer to the manuscript here: https://t.co/x3fXoaO2JX
Installation
The package can be installed from R via devtools:
install.packages("devtools")
devtools::install_github("alfredorago/FESTA")
Usage
Typical usage includes running the function ClusterExons followed by AverageExons.
ClusterExons sorts exons within a gene in either constitutively expressed or alternatively expressed groups.
AverageExons calculate the expression of each exon group for downstream analysis.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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