SIRV_data: Expression of RNA spike-ins across an RNA-seq experiment
In alfredorago/FESTA: Flexible Exon-based Splicing and Transcription Annotation
Description
A dataset containing the expression of Lexogen SIRV spike-ins across an experiment.
Counts are estimated using Kallisto and expressed in Transcript per Million (TPM).
See https://www.lexogen.com/sirvs/downloads for full annotation.
This dataset was obtained from the fold-change mix of Lot No. 216652830
Usage
1
Format
A list with the following entries:
- tmp
A numeric matrix with one row per exon and one column per sample, containing the exon TPM counts
- ID
A data.frame with gene IDs and exon IDs
- annot
A factor storing whether the sample contains SIRV mix E1 or E2
alfredorago/FESTA documentation built on May 24, 2019, 9:50 a.m.
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Description
A dataset containing the expression of Lexogen SIRV spike-ins across an experiment. Counts are estimated using Kallisto and expressed in Transcript per Million (TPM). See https://www.lexogen.com/sirvs/downloads for full annotation. This dataset was obtained from the fold-change mix of Lot No. 216652830
Usage
1 |
Format
A list with the following entries:
- tmp
A numeric matrix with one row per exon and one column per sample, containing the exon TPM counts
- ID
A data.frame with gene IDs and exon IDs
- annot
A factor storing whether the sample contains SIRV mix E1 or E2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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