Files in aliceyiwang/mvabund

Statistical Methods for Analysing Multivariate Abundance Data

.Rbuildignore

.github/workflows/ci.yaml

.gitignore

.travis.yml

DESCRIPTION

Makefile

NAMESPACE

R/AllClass.R R/RcppExports.R R/RcppVersion.R R/RidgeParamEst.R R/absspp.R R/anova.manyany.R R/anova.manyglm.R R/anova.manylm.R R/anova.traitglm.R R/as.data.frame.mvabund.R R/as.matrix.mvabund.R R/best.r.sq.R R/betaest.R R/binstruc.R R/block.to.bootID.R R/boxplot.mvabund.R R/boxplot.mvformula.R R/case.names.manylm.R R/cbind.mvabund.R R/coefplot.manyglm.R R/cooks.distance.manylm.R R/covratio.manylm.R R/cv.glm1path.R R/default.boxplot.mvabund.R R/default.boxplot.mvformula.R R/default.meanvar.plot.R R/default.plot.manyglm.R R/default.plot.manylm.R R/default.plot.mvabund.R R/default.plot.mvformula.R R/default.plotMvaFactor.R R/default.print.anova.manyglm.R R/default.print.summary.manyglm.R R/deviance.manylm.R R/dfbeta.manylm.R R/dfbetas.manylm.R R/dffits.manylm.R R/effic.make.link.R R/extend.x.formula.R R/extract.mvabund.R R/extractAIC.manyglm.R R/formulaUnimva.R R/get_polys.R R/glm1.R R/glm1path.R R/hatvalues.manylm.R R/influence.manylm.R R/is.wholenumber.R R/logLik.manyglm.R R/logLik.manylm.R R/make.vslink.R R/manyany.R R/manyglm.R R/manylm.R R/manylm.influence.R R/manylm.influence.measures.R R/manylm.multiwfit.R R/meanvar.plot.R R/mvabund.object.R R/mvformula.R R/nobs.manyglm.R R/plot.manyglm.R R/plot.manylm.R R/plot.mvabund.R R/plot.mvformula.R R/plotFormulafeature.R R/plotMvaFactor.R R/predict.manyglm.R R/predict.manylm.R R/predict.traitglm.R R/print.anova.manyglm.R R/print.anova.manylm.R R/print.infl.mvabund.R R/print.manyglm.R R/print.mvformula.R R/print.summary.manyglm.R R/print.summary.manylm.R R/quasibinomialMany.R R/quasiloglik.R R/quasipoisson.R R/rbind.mvabund.R R/rcalc.R R/residuals.glm1path.R R/residuals.manyglm.R R/rstandard.manylm.R R/rstudent.manylm.R R/shiftpoints.R R/summary.manyglm.R R/summary.manylm.R R/traitglm.R R/transAxis.SW.R R/unabund.R R/variable.names.manyglm.R R/weighted.residuals.manylm.R R/weights.manyglm.R README.Rmd README.md

_pkgdown.yml

cleanup

data/Tasmania.RData

data/antTraits.RData

data/solberg.RData

data/spider.RData

data/tikus.RData

docs/404.html

docs/articles/Offsets.html

docs/articles/index.html

docs/articles/mvabund.html

docs/articles/mvabund_files/figure-html/unnamed-chunk-3-1.png

docs/articles/mvabund_files/figure-html/unnamed-chunk-5-1.png

docs/articles/mvabund_files/figure-html/unnamed-chunk-6-1.png

docs/authors.html

docs/index.html

docs/link.svg

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

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docs/reference/Tasmania-1.png

docs/reference/Tasmania-2.png

docs/reference/Tasmania.html

docs/reference/anova.manyany.html

docs/reference/anova.manyglm.html

docs/reference/anova.manylm.html

docs/reference/anova.traitglm.html

docs/reference/antTraits.html

docs/reference/best.r.sq.html

docs/reference/boxplot.mvabund-1.png

docs/reference/boxplot.mvabund-2.png

docs/reference/boxplot.mvabund-3.png

docs/reference/boxplot.mvabund.html

docs/reference/coefplot.manyglm.html

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docs/reference/cv.glm1path.html

docs/reference/deviance.manylm.html

docs/reference/extend.x.formula.html

docs/reference/figures/hex_sticker.R

docs/reference/figures/manyglmplot.png

docs/reference/figures/manyglmplot_white.png

docs/reference/figures/mvabund_hex.png

docs/reference/formulaUnimva.html

docs/reference/glm1-1.png

docs/reference/glm1.html

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docs/reference/glm1path.html

docs/reference/index.html

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docs/reference/manyany.html

docs/reference/manyglm.html

docs/reference/manylm.fit.html

docs/reference/manylm.html

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docs/reference/meanvar.plot.html

docs/reference/mvabund-internal.html

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docs/reference/mvabund-package.html

docs/reference/mvabund.html

docs/reference/mvformula.html

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docs/reference/plot.manyany.html

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docs/reference/plot.manylm.html

docs/reference/plot.mvabund-1.png

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docs/reference/plot.mvabund.html

docs/reference/plotMvaFactor-1.png

docs/reference/plotMvaFactor.html

docs/reference/predict.manyglm.html

docs/reference/predict.manylm.html

docs/reference/predict.traitglm.html

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docs/reference/residuals.manyglm.html

docs/reference/ridgeParamEst.html

docs/reference/shiftpoints.html

docs/reference/solberg.html

docs/reference/spider-1.png

docs/reference/spider.html

docs/reference/summary.manyglm.html

docs/reference/summary.manylm.html

docs/reference/tikus.html

docs/reference/traitglm-1.png

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docs/reference/traitglm.html

docs/reference/unabund.html

docs/sitemap.xml

man/Tasmania.Rd man/anova.manyany.Rd man/anova.manyglm.Rd man/anova.manylm.Rd man/anova.traitglm.Rd man/antTraits.Rd man/best.r.sq.Rd man/boxplot.mvabund.Rd man/coefplot.manyglm.Rd man/cv.glm1path.Rd man/deviance.manylm.Rd man/extend.x.formula.Rd man/figures/hex_sticker.R

man/figures/manyglmplot.png

man/figures/manyglmplot_white.png

man/figures/mvabund_hex.png

man/formulaUnimva.Rd man/glm1.Rd man/glm1path.Rd man/logLik.manylm.Rd man/manyany.Rd man/manyglm.Rd man/manylm.Rd man/manylm.fit.Rd man/meanvar.plot.Rd man/mvabund-internal.Rd man/mvabund-package.Rd man/mvabund.Rd man/mvformula.Rd man/plot.manyany.Rd man/plot.manylm.Rd man/plot.mvabund.Rd man/plotMvaFactor.Rd man/predict.manyglm.Rd man/predict.manylm.Rd man/predict.traitglm.Rd man/residuals.manyglm.Rd man/ridgeParamEst.Rd man/shiftpoints.Rd man/solberg.Rd man/spider.Rd man/summary.manyglm.Rd man/summary.manylm.Rd man/tikus.Rd man/traitglm.Rd man/unabund.Rd

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/RcppExports.o

src/Rinterface.cpp

src/Rinterface.o

src/anova.cpp

src/anova.o

src/calctest.cpp

src/calctest.o

src/glm.cpp

src/glm.o

src/glmtest.cpp

src/glmtest.o

src/io.cpp

src/io.o

src/mvabund.dll

src/mvabund_types.h

src/resampTest.h

src/rmv.h

src/rnd.cpp

src/rnd.o

src/simutility.cpp

src/simutility.o

src/summary.cpp

src/summary.o

tests/testthat.R

tests/testthat/block_anova_resampling.rds

tests/testthat/block_summary_resampling.rds

tests/testthat/gamma_summaries.rds

tests/testthat/poisson_spider_summary.rds

tests/testthat/spider_coefs.rds

tests/testthat/test-anova-block.R tests/testthat/test-manyglm.R tests/testthat/test-summary-manyglm.R tests/testthat/utils.R

vignettes/.gitignore

vignettes/Offsets.Rmd vignettes/mvabund.Rmd

aliceyiwang/mvabund documentation built on March 13, 2024, 1:58 a.m.