CNV_score: CNV_score function

In alimahdipour/sciCNV: sciCNV

CNV_score function

Description

Calculates a score for each cell reflecting the similarity of its sciCNV profile to the mean CNV profile of all suspected tumor cells

Usage

CNV_score(M_nf)

Arguments

M_nF	is a matrix of sciCNV profiles, with an extra column that reflects the average sciCNV profile of all suspected tumor cells (test cells)

Value

Calculates the tumor likeness score for each single-cell which is the similarity of sciCNV curve of each cell to average sciCNV of tet cells

Note

Please see the reference and supplmental materials described in the README file for additional information.

Author(s)

Ali Mahdipour-Shirayeh, Princess Margaret Cancer centre, University of Toronto

Examples

tumor_likeness_score <- CNV_score(M_nf=sciCNV_mat)

alimahdipour/sciCNV documentation built on Oct. 16, 2022, 12:56 p.m.