Scaling_CNV: Scaling_sciCNV function

In alimahdipour/sciCNV: sciCNV

Scaling_sciCNV function

Description

To scale preliminary sciCNV-curves derived from scRNA-seq data

Usage

Scaling_CNV(V7Alt, n.TestCells, scaling.factor)

Arguments

V7Alt	preliminary CNV matrix egnerated by sciCNV function
Vn.TestCells	number of test cells
Vscaling.factor	scaling factor to re-scale the preliminary CNV estimate

Value

Scales sciCNV results to be matched with benchmark (e.g. WES result of the same test sample)

Note

Please refer to the reference and supplemental materials described in the README for additional details.

Author(s)

Ali Mahdipour-Shirayeh, Princess Margaret Cancer Centre, University of Toronto

Examples

scaled_sciCNV <- Scaling_CNV(V7Alt=sciCNV_mat, n.TestCells=100, scaling.factor=0.5)

alimahdipour/sciCNV documentation built on Oct. 16, 2022, 12:56 p.m.