prm_to_df: Extract parameters from the biological parameter file and...

In alketh/atlantistools: Process and Visualise Output from Atlantis Models

Description

Extract parameters from the biological parameter file and transform them to a dataframe.

Usage

prm_to_df(prm_biol, fgs, group, parameter)

prm_to_df_ages(prm_biol, fgs, group, parameter)

Arguments

prm_biol	Character string giving the connection to the biological parameterfile. The filename usually contains biol_fishing and does end in .prm.
fgs	Character string giving the connection to the functional groups file. The filename usually contains Groups and does end in .csv.
group	Character vector giving the functional Groups to extract.
parameter	Character vector giving the parameters to extract.

Value

Dataframe with columns 'species' and as many columns as parameters.

Examples

d <- system.file("extdata", "setas-model-new-trunk", package = "atlantistools")
prm_biol <- file.path(d, "VMPA_setas_biol_fishing_Trunk.prm")
fgs <- file.path(d, "SETasGroupsDem_NoCep.csv")
group <- c("FPS", "FVS")
parameter <- c("mum", "C")

prm_to_df_ages(prm_biol, fgs, group, parameter)
prm_to_df(prm_biol, fgs, group, parameter)

alketh/atlantistools documentation built on Oct. 30, 2021, 5:46 a.m.