axytrek_to_dataset: Convert Axytrek biologger data to Arrow dataset

In allisonglider/seabiRds: Prepares biologging data for analysis and upload to the lab database

Convert Axytrek biologger data to Arrow dataset

Description

Reads Axytrek biologger data and parses it into three arrow datasets for ACC, GPS, and TDR data

Usage

axytrek_to_dataset(
  files,
  deployments,
  output_dataset,
  date_format = "%Y-%m-%d %H:%M:%OS",
  timezone = "UTC",
  acc = T,
  tdr = T,
  gps = T,
  plot = T,
  fix_axes = F,
  force_axes = F
)

Arguments

files	List of Axytrek .csv files, data must have file names taht are a partial match to the dep_id in deployment data
deployments	Deployment data formatted using seabiRds::formatDeployments()
output_dataset	Path where arrow dataset should be saved
date_format	The POSIXct date format used in .csv files
timezone	Timezone of raw data, default is UTC
plot	Should plot of data be generated, TRUE or FALSE?

allisonglider/seabiRds documentation built on Feb. 14, 2025, 7:37 a.m.