almeidasilvaf/GEAtlas: Building Expression Atlas from RNA-Seq data

bears is an RNA-seq pipeline to create gene expression atlases from publicly available RNA-seq data in NCBI's SRA. Users can download raw reads, preprocess them, map to a reference genome and transcriptome, and quantify the expression at the gene and transcript levels. The goal of bears is to make RNA-seq data analysis pipelines reproducible, with a framework built on state-of-the art methods and softwares, and all of that in the comfort of an R session.

install.packages("remotes")
remotes::install_github("almeidasilvaf/GEAtlas")