gma_grn: Sample soybean GRN

In almeidasilvaf/magrene: Motif Analysis In Gene Regulatory Networks

Sample soybean GRN

Description

The GRN was inferred with BioNERO using expression data from Libault et al., 2010, and Severin et al., 2010.

Usage

data(gma_grn)

Format

A 3-column data frame with node1, node2, and edge weight.

References

Severin, A. J., Woody, J. L., Bolon, Y. T., Joseph, B., Diers, B. W., Farmer, A. D., ... & Shoemaker, R. C. (2010). RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome. BMC plant biology, 10(1), 1-16.

Libault, M., Farmer, A., Joshi, T., Takahashi, K., Langley, R. J., Franklin, L. D., ... & Stacey, G. (2010). An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. The Plant Journal, 63(1), 86-99.

Examples

data(gma_grn)

almeidasilvaf/magrene documentation built on March 16, 2023, 4:29 a.m.