sd_similarity: Calculate Sorensen-Dice similarity between paralogous gene...
In almeidasilvaf/magrene: Motif Analysis In Gene Regulatory Networks
sd_similarity R Documentation
Calculate Sorensen-Dice similarity between paralogous gene pairs
Description
Calculate Sorensen-Dice similarity between paralogous gene pairs
Usage
sd_similarity(edgelist = NULL, paralogs = NULL)
Arguments
edgelist
A 2-column data frame with regulators in column 1 and
targets in column 2.
paralogs
A 2-column data frame with gene IDs for each paralog
in the paralog pair.
Value
A data frame containing the paralogous gene pairs and their
Sorensen-Dice similarity scores.
Examples
data(gma_ppi)
data(gma_paralogs)
edgelist <- gma_ppi
paralogs <- gma_paralogs
sim <- sd_similarity(edgelist, paralogs)
almeidasilvaf/magrene documentation built on March 16, 2023, 4:29 a.m.
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| sd_similarity | R Documentation |
Calculate Sorensen-Dice similarity between paralogous gene pairs
Description
Calculate Sorensen-Dice similarity between paralogous gene pairs
Usage
sd_similarity(edgelist = NULL, paralogs = NULL)
Arguments
edgelist |
A 2-column data frame with regulators in column 1 and targets in column 2. |
paralogs |
A 2-column data frame with gene IDs for each paralog in the paralog pair. |
Value
A data frame containing the paralogous gene pairs and their Sorensen-Dice similarity scores.
Examples
data(gma_ppi) data(gma_paralogs) edgelist <- gma_ppi paralogs <- gma_paralogs sim <- sd_similarity(edgelist, paralogs)
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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