phylogenomic_profile: Perform phylogenomic profiling for synteny network clusters
In almeidasilvaf/syntenet: Inference And Analysis Of Synteny Networks
View source: R/05_phylogenomic_profiling.R
phylogenomic_profile R Documentation
Perform phylogenomic profiling for synteny network clusters
Description
Perform phylogenomic profiling for synteny network clusters
Usage
phylogenomic_profile(clusters = NULL)
Arguments
clusters
A 2-column data frame with variables Gene and
Cluster as returned by cluster_network.
Value
A matrix of i rows and j columns containing
the number of genes in cluster i for each species j. The number of rows
is equal to the number of clusters in clusters, and
the number of columns is equal to the number of species
in clusters.
Examples
data(clusters)
profiles <- phylogenomic_profile(clusters)
almeidasilvaf/syntenet documentation built on March 23, 2024, 8:27 a.m.
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View source: R/05_phylogenomic_profiling.R
| phylogenomic_profile | R Documentation |
Perform phylogenomic profiling for synteny network clusters
Description
Perform phylogenomic profiling for synteny network clusters
Usage
phylogenomic_profile(clusters = NULL)
Arguments
clusters |
A 2-column data frame with variables Gene and
Cluster as returned by |
Value
A matrix of i rows and j columns containing the number of genes in cluster i for each species j. The number of rows is equal to the number of clusters in clusters, and the number of columns is equal to the number of species in clusters.
Examples
data(clusters)
profiles <- phylogenomic_profile(clusters)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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