API for alorchhota/spice
SPICE: Spanning tree based inference of co-expression networks
| Global functions | |
|---|---|
| check_matrix_symmetry | Source code |
| check_matrix_symmetry_of_net_and_known | Source code |
| check_na.ignore_compatibility_of_net_and_known | Source code |
| check_negative_values_of_net | Source code |
| check_pathways | Source code |
| check_row_col_compatibility_of_net_and_known | Source code |
| check_value_range_of_net_and_known | Source code |
| coexpression_known_interactions_auc | Man page Source code |
| coexpression_known_interactions_cor | Man page |
| coexpression_known_interactions_hub_auc | Man page |
| coexpression_known_interactions_precision_at_top | Man page |
| coexpression_pathway_enrichment | Man page Source code |
| coexpression_shared_pathway_auc | Man page Source code |
| determine_mean_rank | Source code |
| find_motif | Source code |
| find_shortest_paths | Source code |
| from_sampled_assoc_matrix_to_all_assoc_vector | Source code |
| get_checked_coexpression_network | Source code |
| get_edge_ranks | Source code |
| get_lower_triangle_vector | Source code |
| get_rankprod_vector_from_matrix | Source code |
| get_string_ppi_matrix | Man page Source code |
| kruskal_mst_c | Source code |
| make_symmetric | Source code |
| mean_rank_for_known_geodesic_distance | Man page Source code |
| replace_NA_in_matrix | Source code |
| rminmax_df | Man page Source code |
| set_absolute_values_in_matrix | Source code |
| set_diag | Source code |
| set_lower_triangle_vector | Source code |
| spice | Man page Source code |
| update_rankprod_matrix | Source code |
