Man pages for alorchhota/spice
SPICE: Spanning tree based inference of co-expression networks
| coexpression_known_interactions_auc | Area under the curve of a co-expression network to find known... |
| coexpression_known_interactions_cor | Correlation between a co-expression network and a known... |
| coexpression_known_interactions_hub_auc | Evaluate co-expression network's ability to find hubs in... |
| coexpression_known_interactions_precision_at_top | Precision of a co-expression network. |
| coexpression_pathway_enrichment | Enrichment of pathways (gene sets) in a co-expression... |
| coexpression_shared_pathway_auc | Evaluate co-expression network's ability to find edges where... |
| get_string_ppi_matrix | Protein-protein interaction (PPIs) from STRING. |
| mean_rank_for_known_geodesic_distance | Mean rank of edges corresponding to known gene-gene... |
| rminmax_df | Row-wise min-max |
| spice | SPICE: Spanning tree based inference of co-expression... |
